HL_6Q97_088

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCAAGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q97_088 not in the Motif Atlas

Geometric match to HL_4WSM_210

Geometric discrepancy: 0.3553

The information below is about HL_4WSM_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61907.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6Q97|1|2|C|897
6Q97|1|2|G|898
6Q97|1|2|C|899
6Q97|1|2|A|900
6Q97|1|2|A|901
6Q97|1|2|G|902
6Q97|1|2|G|903

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA