HL_6Q97_103

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCUUAAUAACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|4|A|116
6Q97|1|4|G|117
6Q97|1|4|C|118
6Q97|1|4|U|119
6Q97|1|4|U|120
6Q97|1|4|A|121
6Q97|1|4|A|122
6Q97|1|4|U|123
6Q97|1|4|A|124
6Q97|1|4|A|125
6Q97|1|4|C|126
6Q97|1|4|C|127
6Q97|1|4|U|128

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain 5

SsrA-binding protein

Chain h

30S ribosomal protein S3

Chain i

30S ribosomal protein S4

Chain j

30S ribosomal protein S5