HL_6Q97_105

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAGUGGCGUGUCCGUCCGCAGCUGG

Length

26 nucleotides

Bulged bases

6Q97|1|4|U|262, 6Q97|1|4|G|263, 6Q97|1|4|C|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|4|U|253
6Q97|1|4|U|254
6Q97|1|4|A|255
6Q97|1|4|G|256
6Q97|1|4|U|257
6Q97|1|4|G|258
6Q97|1|4|G|259
6Q97|1|4|C|260
6Q97|1|4|G|261
6Q97|1|4|U|262
6Q97|1|4|G|263
6Q97|1|4|U|264
6Q97|1|4|C|265
6Q97|1|4|C|266
6Q97|1|4|G|267
6Q97|1|4|U|268
6Q97|1|4|C|269
6Q97|1|4|C|270
6Q97|1|4|G|271
6Q97|1|4|C|272
6Q97|1|4|A|273
6Q97|1|4|G|274
6Q97|1|4|C|275
6Q97|1|4|U|276
6Q97|1|4|G|277
6Q97|1|4|G|278

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains