HL_6Q97_107
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGUUGGUUAG
- Length
- 11 nucleotides
- Bulged bases
- 6Q97|1|7|U|16, 6Q97|1|7|U|17, 6Q97|1|7|G|18, 6Q97|1|7|U|21, 6Q97|1|7|A|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q97_107 not in the Motif Atlas
- Homologous match to HL_5UD5_001
- Geometric discrepancy: 0.3855
- The information below is about HL_5UD5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
6Q97|1|7|C|13
6Q97|1|7|A|14
6Q97|1|7|G|15
6Q97|1|7|U|16
6Q97|1|7|U|17
6Q97|1|7|G|18
6Q97|1|7|G|19
6Q97|1|7|U|20
6Q97|1|7|U|21
6Q97|1|7|A|22
6Q97|1|7|G|23
Current chains
- Chain 7
- tRNA-Val
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: