HL_6Q97_108
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGACAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q97_108 not in the Motif Atlas
- Homologous match to HL_4WT8_216
- Geometric discrepancy: 0.3442
- The information below is about HL_4WT8_216
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6Q97|1|7|C|32
6Q97|1|7|U|33
6Q97|1|7|U|34
6Q97|1|7|G|35
6Q97|1|7|A|36
6Q97|1|7|C|37
6Q97|1|7|A|38
6Q97|1|7|U|39
6Q97|1|7|G|40
Current chains
- Chain 7
- tRNA-Val
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 8
- Transfer RNA; tRNA
- Chain 9
- mRNA
- Chain n
- 30S ribosomal protein S9
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