HL_6Q97_114

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCCGGCGAGGGG

Length

13 nucleotides

Bulged bases

6Q97|1|1|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|C|484
6Q97|1|1|C|485
6Q97|1|1|C|486
6Q97|1|1|C|487
6Q97|1|1|G|488
6Q97|1|1|G|489
6Q97|1|1|C|490
6Q97|1|1|G|491
6Q97|1|1|A|492
6Q97|1|1|G|493
6Q97|1|1|G|494
6Q97|1|1|G|495
6Q97|1|1|G|496

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Nascent peptide

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24