HL_6Q97_117

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCGGG(PSU)GCUAACGUCCGUC

Length

20 nucleotides

Bulged bases

6Q97|1|1|U|958, 6Q97|1|1|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|G|949
6Q97|1|1|G|950
6Q97|1|1|C|951
6Q97|1|1|G|952
6Q97|1|1|G|953
6Q97|1|1|G|954
6Q97|1|1|PSU|955
6Q97|1|1|G|956
6Q97|1|1|C|957
6Q97|1|1|U|958
6Q97|1|1|A|959
6Q97|1|1|A|960
6Q97|1|1|C|961
6Q97|1|1|G|962
6Q97|1|1|U|963
6Q97|1|1|C|964
6Q97|1|1|C|965
6Q97|1|1|G|966
6Q97|1|1|U|967
6Q97|1|1|C|968

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16

Chain Z

50S ribosomal protein L30