HL_6Q97_122

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGGUAAGUUCCG

Length

13 nucleotides

Bulged bases

6Q97|1|1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q97_122 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1079

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Q97|1|1|C|1947
6Q97|1|1|G|1948
6Q97|1|1|G|1949
6Q97|1|1|G|1950
6Q97|1|1|U|1951
6Q97|1|1|A|1952
6Q97|1|1|A|1953
6Q97|1|1|G|1954
6Q97|1|1|U|1955
6Q97|1|1|U|1956
6Q97|1|1|C|1957
6Q97|1|1|C|1958
6Q97|1|1|G|1959

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L14