HL_6Q97_134

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUACGGCCGCAAGGUUAAAAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|887
6Q97|1|2|G|888
6Q97|1|2|A|889
6Q97|1|2|G|890
6Q97|1|2|U|891
6Q97|1|2|A|892
6Q97|1|2|C|893
6Q97|1|2|G|894
6Q97|1|2|G|895
6Q97|1|2|C|896
6Q97|1|2|C|897
6Q97|1|2|G|898
6Q97|1|2|C|899
6Q97|1|2|A|900
6Q97|1|2|A|901
6Q97|1|2|G|902
6Q97|1|2|G|903
6Q97|1|2|U|904
6Q97|1|2|U|905
6Q97|1|2|A|906
6Q97|1|2|A|907
6Q97|1|2|A|908
6Q97|1|2|A|909
6Q97|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain q

30S ribosomal protein S12