HL_6Q97_145

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAACUGAGACACGGUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|319
6Q97|1|2|A|320
6Q97|1|2|A|321
6Q97|1|2|C|322
6Q97|1|2|U|323
6Q97|1|2|G|324
6Q97|1|2|A|325
6Q97|1|2|G|326
6Q97|1|2|A|327
6Q97|1|2|C|328
6Q97|1|2|A|329
6Q97|1|2|C|330
6Q97|1|2|G|331
6Q97|1|2|G|332
6Q97|1|2|U|333
6Q97|1|2|C|334

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20