HL_6Q98_002
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUGAUAUGAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q98_002 not in the Motif Atlas
- Geometric match to HL_8H1B_001
- Geometric discrepancy: 0.3441
- The information below is about HL_8H1B_001
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_46665.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6Q98|1|1|G|86
6Q98|1|1|U|87
6Q98|1|1|G|88
6Q98|1|1|A|89
6Q98|1|1|U|90
6Q98|1|1|A|91
6Q98|1|1|U|92
6Q98|1|1|G|93
6Q98|1|1|A|94
6Q98|1|1|A|95
6Q98|1|1|C|96
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
- Chain U
- 50S ribosomal protein L24
- Chain Y
- 50S ribosomal protein L29
Coloring options: