6Q98 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6Q98_001 | 1/1/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_6Q98_131 | 1/1/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_6Q98_132 | 1/1/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_6Q98_004 | 1/1/137:142 | UNCG | geometric HL_2HW8_001 HL_34617.5 | |
| HL_6Q98_005 | 1/1/158:168 | No text annotation | ||
| HL_6Q98_109 | 1/1/186:210 | No text annotation | ||
| HL_6Q98_006 | 1/1/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_6Q98_007 | 1/1/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_6Q98_008 | 1/1/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_6Q98_009 | 1/1/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_6Q98_010 | 1/1/319:323 | No text annotation | homologous HL_4WF9_011 HL_75660.5 | |
| HL_6Q98_011 | 1/1/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6Q98_012 | 1/1/380:394 | No text annotation | ||
| HL_6Q98_013 | 1/1/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
| HL_6Q98_014 | 1/1/461:468 | GNRA with near cWW | geometric HL_2IL9_007 NA | |
| HL_6Q98_015 | 1/1/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_6Q98_110 | 1/1/544:549 | No text annotation | ||
| HL_6Q98_017 | 1/1/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.9 | |
| HL_6Q98_018 | 1/1/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_6Q98_019 | 1/1/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_6Q98_020 | 1/1/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_6Q98_021 | 1/1/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_6Q98_022 | 1/1/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
| HL_6Q98_112 | 1/1/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_6Q98_024 | 1/1/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6Q98_025 | 1/1/880:897 | No text annotation | ||
| HL_6Q98_113 | 1/1/951:966 | No text annotation | ||
| HL_6Q98_026 | 1/1/953:964 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6Q98_027 | 1/1/977:986 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_6Q98_028 | 1/1/1058:1080 | No text annotation | ||
| HL_6Q98_029 | 1/1/1092:1099 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6Q98_030 | 1/1/1171:1178 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6Q98_031 | 1/1/1222:1227 | GNRA | homologous HL_7A0S_031 HL_37824.8 | |
| HL_6Q98_032 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_6Q98_033 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_6Q98_034 | 1/1/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_6Q98_035 | 1/1/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_6Q98_036 | 1/1/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_6Q98_037 | 1/1/1492:1498 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_6Q98_038 | 1/1/1532:1539 | No text annotation | ||
| HL_6Q98_039 | 1/1/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_6Q98_040 | 1/1/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_6Q98_041 | 1/1/1629:1637 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
| HL_6Q98_042 | 1/1/1691:1696 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6Q98_043 | 1/1/1727:1733 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_6Q98_044 | 1/1/1752:1756 | No text annotation | homologous HL_7A0S_044 HL_80709.3 | |
| HL_6Q98_045 | 1/1/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_6Q98_046 | 1/1/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6Q98_047 | 1/1/1860:1882 | No text annotation | ||
| HL_6Q98_048 | 1/1/1910:1920 | No text annotation | ||
| HL_6Q98_049 | 1/1/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_6Q98_050 | 1/1/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.3 | |
| HL_6Q98_051 | 1/1/2127:2161 | No text annotation | ||
| HL_6Q98_052 | 1/1/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_6Q98_053 | 1/1/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6Q98_054 | 1/1/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_6Q98_117 | 1/1/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_6Q98_056 | 1/1/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_6Q98_057 | 1/1/2354:2363 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6Q98_058 | 1/1/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.8 | |
| HL_6Q98_059 | 1/1/2404:2413 | No text annotation | homologous HL_4WF9_055 HL_53454.2 | |
| HL_6Q98_060 | 1/1/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
| HL_6Q98_061 | 1/1/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_6Q98_062 | 1/1/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_6Q98_063 | 1/1/2594:2599 | GNRA | homologous HL_7A0S_062 HL_37824.8 | |
| HL_6Q98_120 | 1/1/2652:2668 | No text annotation | ||
| HL_6Q98_064 | 1/1/2658:2663 | GNRA | geometric HL_6UFH_004 HL_37824.8 | |
| HL_6Q98_121 | 1/1/2699:2708 | No text annotation | ||
| HL_6Q98_065 | 1/1/2701:2706 | Ribsomal LSU H95 | homologous HL_4WF9_061 HL_65794.5 | |
| HL_6Q98_066 | 1/1/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_6Q98_067 | 1/1/2795:2801 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
| HL_6Q98_068 | 1/1/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6Q98_069 | 1/1/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_6Q98_070 | 1/2/11:23 | No text annotation | ||
| HL_6Q98_071 | 1/2/79:90 | No text annotation | ||
| HL_6Q98_072 | 1/2/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_6Q98_073 | 1/2/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_6Q98_074 | 1/2/206:213 | No text annotation | ||
| HL_6Q98_075 | 1/2/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6Q98_076 | 1/2/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_6Q98_077 | 1/2/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6Q98_078 | 1/2/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_6Q98_079 | 1/2/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_6Q98_080 | 1/2/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_6Q98_133 | 1/2/460:472 | No text annotation | ||
| HL_6Q98_127 | 1/2/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.8 | |
| HL_6Q98_083 | 1/2/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6Q98_084 | 1/2/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6Q98_085 | 1/2/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_6Q98_086 | 1/2/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_6Q98_087 | 1/2/840:846 | No text annotation | ||
| HL_6Q98_088 | 1/2/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_6Q98_128 | 1/2/895:904 | No text annotation | geometric HL_8KAL_008 NA | |
| HL_6Q98_089 | 1/2/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_6Q98_129 | 1/2/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_6Q98_091 | 1/2/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_6Q98_092 | 1/2/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_6Q98_093 | 1/2/1087:1098 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6Q98_094 | 1/2/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_6Q98_095 | 1/2/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_6Q98_096 | 1/2/1264:1271 | Other HL | geometric HL_5J7L_200 HL_08100.1 | |
| HL_6Q98_097 | 1/2/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_6Q98_098 | 1/2/1355:1367 | No text annotation | ||
| HL_6Q98_099 | 1/2/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_6Q98_130 | 1/3/34:48 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6Q98_102 | 1/3/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_6Q98_103 | 1/4/58:75 | No text annotation | ||
| HL_6Q98_104 | 1/4/117:127 | No text annotation | ||
| HL_6Q98_105 | 1/4/147:168 | No text annotation | ||
| HL_6Q98_106 | 1/4/210:219 | No text annotation | ||
| HL_6Q98_107 | 1/4/259:272 | No text annotation | ||
| HL_6Q98_108 | 1/4/340:348 | T-loop with 2 stacked bulged bases | homologous HL_4V8Q_110 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6Q98_002 | tRNA anticodon loop | ||
| HL_6Q98_003 | No text annotation | ||
| HL_6Q98_016 | No text annotation | ||
| HL_6Q98_111 | No text annotation | ||
| HL_6Q98_023 | No text annotation | ||
| HL_6Q98_114 | No text annotation | ||
| HL_6Q98_115 | No text annotation | ||
| HL_6Q98_116 | No text annotation | ||
| HL_6Q98_055 | No text annotation | ||
| HL_6Q98_118 | No text annotation | ||
| HL_6Q98_119 | No text annotation | ||
| HL_6Q98_122 | No text annotation | ||
| HL_6Q98_123 | No text annotation | ||
| HL_6Q98_124 | tRNA D-loop | ||
| HL_6Q98_125 | No text annotation | ||
| HL_6Q98_081 | No text annotation | ||
| HL_6Q98_126 | No text annotation | ||
| HL_6Q98_082 | No text annotation | ||
| HL_6Q98_090 | No text annotation | ||
| HL_6Q98_100 | GNRA | ||
| HL_6Q98_101 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6Q98_169 | 1/1/32:35, 1/1/445:473 | No text annotation | ||
| IL_6Q98_001 | 1/1/36:37, 1/1/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6Q98_002 | 1/1/42:44, 1/1/434:437 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_90351.1 | |
| IL_6Q98_170 | 1/1/75:76, 1/1/110:112 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6Q98_003 | 1/1/81:85, 1/1/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_6Q98_004 | 1/1/183:184, 1/1/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_6Q98_005 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_6Q98_006 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_6Q98_007 | 1/1/274:281, 1/1/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6Q98_008 | 1/1/293:295, 1/1/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6Q98_009 | 1/1/481:485, 1/1/495:509 | No text annotation | geometric IL_4V9F_014 IL_31504.1 | |
| IL_6Q98_010 | 1/1/536:539, 1/1/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_6Q98_011 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | geometric IL_5AY2_001 IL_87907.2 | |
| IL_6Q98_174 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_6Q98_013 | 1/1/697:698, 1/1/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.7 | |
| IL_6Q98_014 | 1/1/702:703, 1/1/728:730 | Single bulged G | homologous IL_5J7L_262 IL_00225.14 | |
| IL_6Q98_015 | 1/1/703:707, 1/1/724:728 | Triple sheared | geometric IL_4V9F_027 IL_50730.2 | |
| IL_6Q98_016 | 1/1/738:741, 1/1/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6Q98_017 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_6Q98_018 | 1/1/837:838, 1/1/940:942 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_6Q98_019 | 1/1/844:847, 1/1/933:934 | Other IL | geometric IL_5J7L_267 IL_90729.1 | |
| IL_6Q98_220 | 1/1/847:848, 1/1/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_6Q98_021 | 1/1/850:851, 1/1/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_6Q98_022 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_6Q98_023 | 1/1/862:863, 1/1/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.14 | |
| IL_6Q98_221 | 1/1/864:872, 1/1/905:912 | No text annotation | ||
| IL_6Q98_176 | 1/1/874:879, 1/1/898:903 | No text annotation | ||
| IL_6Q98_025 | 1/1/875:879, 1/1/898:902 | No text annotation | ||
| IL_6Q98_026 | 1/1/994:996, 1/1/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6Q98_027 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6Q98_028 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_6Q98_177 | 1/1/1004:1013, 1/1/1149:1151 | No text annotation | ||
| IL_6Q98_029 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_6Q98_030 | 1/1/1018:1024, 1/1/1140:1144 | Kink-turn related | homologous IL_5J7L_280 IL_57188.5 | |
| IL_6Q98_031 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6Q98_032 | 1/1/1031:1036, 1/1/1119:1123 | Partly complementary | geometric IL_6CZR_167 NA | |
| IL_6Q98_033 | 1/1/1038:1041, 1/1/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_6Q98_179 | 1/1/1043:1051, 1/1/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6Q98_035 | 1/1/1087:1090, 1/1/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_6Q98_036 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_6Q98_037 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6Q98_038 | 1/1/1208:1216, 1/1/1233:1238 | No text annotation | ||
| IL_6Q98_039 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_6Q98_040 | 1/1/1304:1306, 1/1/1623:1624 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_6Q98_041 | 1/1/1319:1324, 1/1/1330:1333 | No text annotation | ||
| IL_6Q98_222 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_6Q98_223 | 1/1/1415:1416, 1/1/1582:1587 | No text annotation | ||
| IL_6Q98_044 | 1/1/1417:1421, 1/1/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_6Q98_045 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_6Q98_046 | 1/1/1436:1441, 1/1/1550:1556 | No text annotation | ||
| IL_6Q98_224 | 1/1/1437:1442, 1/1/1549:1555 | No text annotation | ||
| IL_6Q98_047 | 1/1/1450:1451, 1/1/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_6Q98_048 | 1/1/1468:1471, 1/1/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6Q98_049 | 1/1/1474:1478, 1/1/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_6Q98_050 | 1/1/1480:1482, 1/1/1507:1511 | No text annotation | ||
| IL_6Q98_051 | 1/1/1489:1491, 1/1/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.7 | |
| IL_6Q98_052 | 1/1/1526:1529, 1/1/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_6Q98_053 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6Q98_054 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_6Q98_055 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6Q98_185 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_6Q98_056 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_6Q98_057 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6Q98_225 | 1/1/1711:1718, 1/1/1742:1747 | No text annotation | ||
| IL_6Q98_058 | 1/1/1712:1718, 1/1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_6Q98_059 | 1/1/1720:1725, 1/1/1735:1740 | Triple sheared with non-canonical cWW | geometric IL_7A0S_018 IL_06136.2 | |
| IL_6Q98_226 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_31462.7 | |
| IL_6Q98_061 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_6Q98_062 | 1/1/1837:1840, 1/1/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 IL_95583.2 | |
| IL_6Q98_227 | 1/1/1841:1842, 1/1/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.5 | |
| IL_6Q98_064 | 1/1/1846:1849, 1/1/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_68140.4 | |
| IL_6Q98_187 | 1/1/1851:1860, 1/1/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_6Q98_065 | 1/1/1933:1934, 1/1/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
| IL_6Q98_066 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_6Q98_228 | 1/1/2050:2053, 1/1/2616:2618 | No text annotation | ||
| IL_6Q98_068 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_6Q98_229 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_6Q98_230 | 1/1/2070:2071, 1/1/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_6Q98_231 | 1/1/2079:2083, 1/1/2236:2241 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_6Q98_070 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_85599.2 | |
| IL_6Q98_071 | 1/1/2085:2087, 1/1/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_6Q98_192 | 1/1/2094:2124, 1/1/2174:2195 | No text annotation | ||
| IL_6Q98_072 | 1/1/2124:2127, 1/1/2161:2174 | No text annotation | ||
| IL_6Q98_193 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_6Q98_074 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
| IL_6Q98_075 | 1/1/2401:2403, 1/1/2414:2415 | Single bulged U | geometric IL_8C3A_056 NA | |
| IL_6Q98_194 | 1/1/2453:2454, 1/1/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_6Q98_195 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform | homologous IL_5J7L_392 IL_48076.6 | |
| IL_6Q98_232 | 1/1/2457:2462, 1/1/2488:2494 | No text annotation | ||
| IL_6Q98_233 | 1/1/2466:2470, 1/1/2480:2484 | Triple sheared | homologous IL_7A0S_087 IL_17948.2 | |
| IL_6Q98_196 | 1/1/2507:2508, 1/1/2580:2582 | Major groove platform | homologous IL_5J7L_394 IL_07039.3 | |
| IL_6Q98_197 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_07785.1 | |
| IL_6Q98_081 | 1/1/2512:2515, 1/1/2570:2574 | No text annotation | ||
| IL_6Q98_082 | 1/1/2515:2516, 1/1/2568:2570 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6Q98_083 | 1/1/2522:2523, 1/1/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6Q98_085 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6Q98_086 | 1/1/2636:2640, 1/1/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_6Q98_087 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_6Q98_198 | 1/1/2680:2685, 1/1/2724:2727 | No text annotation | ||
| IL_6Q98_199 | 1/1/2687:2691, 1/1/2718:2722 | No text annotation | homologous IL_9DFE_104 IL_23774.1 | |
| IL_6Q98_234 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_6Q98_091 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_6Q98_092 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_6Q98_093 | 1/1/2838:2839, 1/1/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_66635.5 | |
| IL_6Q98_094 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_6Q98_095 | 1/1/2847:2852, 1/1/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6Q98_235 | 1/2/30:32, 1/2/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_6Q98_097 | 1/2/44:45, 1/2/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_6Q98_098 | 1/2/47:52, 1/2/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_6Q98_236 | 1/2/54:56, 1/2/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6Q98_100 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_6Q98_101 | 1/2/67:69, 1/2/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_6Q98_102 | 1/2/70:73, 1/2/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_6Q98_205 | 1/2/75:76, 1/2/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.14 | |
| IL_6Q98_104 | 1/2/128:131, 1/2/231:233 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_6Q98_206 | 1/2/128:136, 1/2/227:233 | No text annotation | ||
| IL_6Q98_105 | 1/2/131:136, 1/2/227:231 | No text annotation | ||
| IL_6Q98_106 | 1/2/144:146, 1/2/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_6Q98_207 | 1/2/147:153, 1/2/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_6Q98_108 | 1/2/203:206, 1/2/213:214 | Minor groove platform | geometric IL_3IWN_005 IL_15052.4 | |
| IL_6Q98_109 | 1/2/242:247, 1/2/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_6Q98_237 | 1/2/249:252, 1/2/274:275 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_6Q98_111 | 1/2/292:293, 1/2/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6Q98_112 | 1/2/367:369, 1/2/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_6Q98_113 | 1/2/371:375, 1/2/389:390 | C-loop | geometric IL_6CZR_127 NA | |
| IL_6Q98_208 | 1/2/371:376, 1/2/387:390 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_6Q98_114 | 1/2/375:376, 1/2/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
| IL_6Q98_115 | 1/2/409:416, 1/2/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_6Q98_116 | 1/2/440:442, 1/2/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_6Q98_117 | 1/2/446:450, 1/2/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_6Q98_118 | 1/2/450:455, 1/2/477:483 | No text annotation | geometric IL_5J7L_023 IL_70801.1 | |
| IL_6Q98_119 | 1/2/504:511, 1/2/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6Q98_120 | 1/2/515:521, 1/2/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6Q98_121 | 1/2/569:575, 1/2/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6Q98_122 | 1/2/580:584, 1/2/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6Q98_123 | 1/2/594:596, 1/2/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_6Q98_124 | 1/2/597:598, 1/2/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_6Q98_125 | 1/2/605:612, 1/2/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6Q98_126 | 1/2/654:655, 1/2/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_6Q98_127 | 1/2/659:660, 1/2/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_6Q98_128 | 1/2/662:666, 1/2/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6Q98_212 | 1/2/673:677, 1/2/713:717 | Triple non-canonical cWW pairs | homologous IL_6CZR_409 NA | |
| IL_6Q98_130 | 1/2/683:688, 1/2/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6Q98_131 | 1/2/774:778, 1/2/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_6Q98_132 | 1/2/779:783, 1/2/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_6Q98_133 | 1/2/887:894, 1/2/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6Q98_213 | 1/2/922:923, 1/2/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_6Q98_135 | 1/2/925:927, 1/2/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_6Q98_214 | 1/2/933:935, 1/2/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6Q98_137 | 1/2/1003:1007, 1/2/1022:1037 | No text annotation | ||
| IL_6Q98_138 | 1/2/1048:1050, 1/2/1208:1209 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_6Q98_215 | 1/2/1052:1056, 1/2/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6Q98_140 | 1/2/1057:1058, 1/2/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6Q98_141 | 1/2/1060:1061, 1/2/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
| IL_6Q98_142 | 1/2/1061:1063, 1/2/1193:1195 | Isolated non-canonical cWW pair | geometric IL_1UN6_005 IL_87907.2 | |
| IL_6Q98_143 | 1/2/1123:1129, 1/2/1143:1150 | No text annotation | ||
| IL_6Q98_216 | 1/2/1123:1132, 1/2/1142:1150 | No text annotation | ||
| IL_6Q98_144 | 1/2/1129:1132, 1/2/1142:1143 | Minor groove platform | geometric IL_3RW6_003 IL_95583.2 | |
| IL_6Q98_145 | 1/2/1158:1161, 1/2/1175:1181 | No text annotation | homologous IL_4LFB_050 IL_42032.1 | |
| IL_6Q98_146 | 1/2/1242:1244, 1/2/1293:1296 | No text annotation | ||
| IL_6Q98_217 | 1/2/1245:1253, 1/2/1284:1292 | No text annotation | ||
| IL_6Q98_147 | 1/2/1255:1264, 1/2/1271:1282 | No text annotation | ||
| IL_6Q98_148 | 1/2/1303:1308, 1/2/1329:1334 | No text annotation | homologous IL_5J7L_057 IL_85536.2 | |
| IL_6Q98_149 | 1/2/1401:1404, 1/2/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_6Q98_150 | 1/2/1405:1409, 1/2/1491:1496 | No text annotation | homologous IL_5J7L_060 NA | |
| IL_6Q98_218 | 1/2/1412:1415, 1/2/1485:1488 | Tandem non-canonical cWW pairs | homologous IL_6CZR_168 NA | |
| IL_6Q98_152 | 1/2/1416:1419, 1/2/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6Q98_153 | 1/2/1421:1425, 1/2/1476:1479 | No text annotation | ||
| IL_6Q98_154 | 1/2/1425:1429, 1/2/1471:1476 | No text annotation | ||
| IL_6Q98_155 | 1/2/1429:1435, 1/2/1466:1471 | No text annotation | ||
| IL_6Q98_156 | 1/2/1440:1442, 1/2/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_6Q98_157 | 1/2/1445:1448, 1/2/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_6Q98_158 | 1/3/1:2, 1/3/118:120 | No text annotation | ||
| IL_6Q98_238 | 1/3/17:18, 1/3/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
| IL_6Q98_160 | 1/3/23:28, 1/3/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_6Q98_161 | 1/3/30:32, 1/3/50:54 | No text annotation | homologous IL_4WF9_114 NA | |
| IL_6Q98_162 | 1/3/71:79, 1/3/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_6Q98_163 | 1/4/28:36, 1/4/318:325 | No text annotation | ||
| IL_6Q98_164 | 1/4/37:40, 1/4/314:317 | No text annotation | ||
| IL_6Q98_165 | 1/4/113:114, 1/4/130:132 | Single bulged U | geometric IL_8P9A_358 IL_89505.4 | |
| IL_6Q98_166 | 1/4/143:145, 1/4/170:176 | No text annotation | ||
| IL_6Q98_219 | 1/4/202:208, 1/4/221:227 | No text annotation | ||
| IL_6Q98_168 | 1/4/257:259, 1/4/272:273 | Single bulged A | geometric IL_4WF9_098 IL_31462.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6Q98_171 | No text annotation | ||
| IL_6Q98_172 | No text annotation | ||
| IL_6Q98_173 | Isolated non-canonical cWW pair | ||
| IL_6Q98_012 | No text annotation | ||
| IL_6Q98_020 | Isolated non-canonical cWW pair | ||
| IL_6Q98_175 | No text annotation | ||
| IL_6Q98_024 | No text annotation | ||
| IL_6Q98_178 | Partly complementary | ||
| IL_6Q98_034 | No text annotation | ||
| IL_6Q98_180 | No text annotation | ||
| IL_6Q98_181 | No text annotation | ||
| IL_6Q98_042 | tSH-tHW-tHS-cWW | ||
| IL_6Q98_182 | No text annotation | ||
| IL_6Q98_043 | No text annotation | ||
| IL_6Q98_183 | No text annotation | ||
| IL_6Q98_184 | Isolated non-canonical cWW pair | ||
| IL_6Q98_186 | No text annotation | ||
| IL_6Q98_060 | Other IL | ||
| IL_6Q98_063 | No text annotation | ||
| IL_6Q98_188 | No text annotation | ||
| IL_6Q98_067 | No text annotation | ||
| IL_6Q98_069 | No text annotation | ||
| IL_6Q98_189 | Tandem non-canonical cWW pairs | ||
| IL_6Q98_190 | No text annotation | ||
| IL_6Q98_191 | tSH-tHW-tHS-cWW | ||
| IL_6Q98_073 | Isolated non-canonical cWW pair | ||
| IL_6Q98_076 | No text annotation | ||
| IL_6Q98_077 | No text annotation | ||
| IL_6Q98_078 | No text annotation | ||
| IL_6Q98_079 | No text annotation | ||
| IL_6Q98_080 | No text annotation | ||
| IL_6Q98_084 | No text annotation | ||
| IL_6Q98_088 | No text annotation | ||
| IL_6Q98_089 | No text annotation | ||
| IL_6Q98_090 | No text annotation | ||
| IL_6Q98_200 | Isolated non-canonical cWW pair | ||
| IL_6Q98_201 | No text annotation | ||
| IL_6Q98_096 | Isolated non-canonical cWW pair | ||
| IL_6Q98_202 | No text annotation | ||
| IL_6Q98_099 | Minor groove platform with extra cWW | ||
| IL_6Q98_203 | No text annotation | ||
| IL_6Q98_204 | No text annotation | ||
| IL_6Q98_103 | Single bulged G, near cWW | ||
| IL_6Q98_107 | No text annotation | ||
| IL_6Q98_110 | No text annotation | ||
| IL_6Q98_209 | No text annotation | ||
| IL_6Q98_210 | No text annotation | ||
| IL_6Q98_211 | No text annotation | ||
| IL_6Q98_129 | No text annotation | ||
| IL_6Q98_134 | Isolated non-canonical cWW pair | ||
| IL_6Q98_136 | No text annotation | ||
| IL_6Q98_139 | No text annotation | ||
| IL_6Q98_151 | No text annotation | ||
| IL_6Q98_159 | Isolated non-canonical cWW with bulges | ||
| IL_6Q98_167 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6Q98_035 | 1/1/24:31, 1/1/474:484, 1/1/496:516 | No text annotation | ||
| J3_6Q98_024 | 1/1/56:57, 1/1/70:75, 1/1/112:114 | No text annotation | ||
| J3_6Q98_002 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_6Q98_003 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_6Q98_004 | 1/1/1055:1058, 1/1/1080:1087, 1/1/1102:1104 | No text annotation | ||
| J3_6Q98_005 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_6Q98_006 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1623 | No text annotation | ||
| J3_6Q98_036 | 1/1/1344:1357, 1/1/1374:1385, 1/1/1402:1403 | No text annotation | ||
| J3_6Q98_037 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_6Q98_007 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_6Q98_008 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6Q98_009 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | homologous J3_4WF9_009 J3_32601.5 | |
| J3_6Q98_010 | 1/1/2789:2791, 1/1/2805:2806, 1/1/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_6Q98_038 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_6Q98_011 | 1/2/46:47, 1/2/361:367, 1/2/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6Q98_029 | 1/2/46:52, 1/2/359:367, 1/2/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_6Q98_012 | 1/2/586:588, 1/2/651:654, 1/2/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6Q98_030 | 1/2/586:588, 1/2/651:655, 1/2/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_6Q98_013 | 1/2/672:673, 1/2/717:725, 1/2/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6Q98_014 | 1/2/826:829, 1/2/857:861, 1/2/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6Q98_031 | 1/2/936:939, 1/2/1344:1350, 1/2/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6Q98_015 | 1/2/941:948, 1/2/1233:1237, 1/2/1337:1342 | No text annotation | ||
| J3_6Q98_016 | 1/2/952:962, 1/2/973:984, 1/2/1221:1229 | No text annotation | ||
| J3_6Q98_017 | 1/2/990:999, 1/2/1041:1047, 1/2/1210:1215 | No text annotation | ||
| J3_6Q98_018 | 1/2/1063:1068, 1/2/1107:1113, 1/2/1187:1193 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_6Q98_019 | 1/2/1073:1074, 1/2/1083:1087, 1/2/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_6Q98_032 | 1/2/1115:1120, 1/2/1153:1158, 1/2/1181:1185 | No text annotation | ||
| J3_6Q98_033 | 1/2/1115:1120, 1/2/1153:1161, 1/2/1175:1185 | No text annotation | ||
| J3_6Q98_021 | 1/2/1237:1242, 1/2/1296:1303, 1/2/1334:1337 | No text annotation | ||
| J3_6Q98_022 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_6Q98_039 | 1/4/7:22, 1/4/331:336, 1/4/352:353 | No text annotation | ||
| J4_6Q98_001 | 1/1/268:271, 1/1/366:377, 1/1/397:406, 1/1/421:424 | No text annotation | ||
| J4_6Q98_002 | 1/1/297:301, 1/1/316:319, 1/1/323:326, 1/1/336:341 | No text annotation | ||
| J4_6Q98_013 | 1/1/601:604, 1/1/624:628, 1/1/635:638, 1/1/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6Q98_014 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6Q98_015 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_6Q98_006 | 1/1/1444:1445, 1/1/1466:1471, 1/1/1520:1529, 1/1/1542:1547 | No text annotation | ||
| J4_6Q98_007 | 1/1/2285:2290, 1/1/2342:2347, 1/1/2370:2372, 1/1/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_6Q98_016 | 1/1/2643:2646, 1/1/2674:2676, 1/1/2731:2735, 1/1/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_6Q98_009 | 1/2/115:122, 1/2/239:240, 1/2/286:289, 1/2/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_6Q98_017 | 1/2/142:144, 1/2/178:184, 1/2/193:198, 1/2/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_6Q98_018 | 1/2/575:577, 1/2/764:769, 1/2/810:821, 1/2/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_6Q98_012 | 1/2/941:948, 1/2/1233:1242, 1/2/1296:1303, 1/2/1334:1342 | No text annotation | ||
| J5_6Q98_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:154, 1/1/172:178 | No text annotation | ||
| J5_6Q98_002 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_4WF9_003 J5_43153.5 | |
| J5_6Q98_003 | 1/1/584:589, 1/1/668:679, 1/1/798:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | ||
| J5_6Q98_004 | 1/1/1310:1315, 1/1/1337:1357, 1/1/1374:1386, 1/1/1401:1405, 1/1/1597:1604 | No text annotation | ||
| J5_6Q98_010 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1765, 1/1/1987:1990 | No text annotation | ||
| J5_6Q98_006 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2507, 1/1/2582:2588, 1/1/2606:2611 | No text annotation | ||
| J5_6Q98_007 | 1/2/33:39, 1/2/403:406, 1/2/436:440, 1/2/497:501, 1/2/544:551 | No text annotation | ||
| J5_6Q98_008 | 1/2/58:61, 1/2/106:113, 1/2/314:316, 1/2/337:339, 1/2/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_6Q98_009 | 1/4/41:56, 1/4/77:108, 1/4/137:140, 1/4/179:201, 1/4/228:313 | No text annotation | ||
| J6_6Q98_005 | 1/1/42:46, 1/1/179:183, 1/1/214:224, 1/1/231:235, 1/1/262:266, 1/1/426:437 | No text annotation | ||
| J6_6Q98_006 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1835, 1/1/1905:1906, 1/1/1924:1934, 1/1/1964:1979 | No text annotation | ||
| J6_6Q98_007 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2284, 1/1/2384:2395, 1/1/2421:2435 | No text annotation | ||
| J6_6Q98_004 | 1/4/41:56, 1/4/77:108, 1/4/137:140, 1/4/179:201, 1/4/228:259, 1/4/272:313 | No text annotation | ||
| J7_6Q98_001 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2789, 1/1/2894:2895 | No text annotation | ||
| J7_6Q98_003 | 1/1/817:822, 1/1/835:837, 1/1/942:949, 1/1/968:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6Q98_023 | No text annotation | ||
| J3_6Q98_001 | No text annotation | ||
| J3_6Q98_025 | No text annotation | ||
| J3_6Q98_026 | No text annotation | ||
| J3_6Q98_027 | No text annotation | ||
| J3_6Q98_028 | No text annotation | ||
| J3_6Q98_020 | No text annotation | ||
| J3_6Q98_034 | No text annotation | ||
| J4_6Q98_003 | No text annotation | ||
| J4_6Q98_004 | No text annotation | ||
| J4_6Q98_005 | No text annotation | ||
| J4_6Q98_008 | No text annotation | ||
| J4_6Q98_010 | No text annotation | ||
| J4_6Q98_011 | No text annotation | ||
| J5_6Q98_005 | No text annotation | ||
| J6_6Q98_001 | No text annotation | ||
| J6_6Q98_002 | No text annotation | ||
| J6_6Q98_003 | No text annotation | ||
| J7_6Q98_002 | No text annotation |
Coloring options: