HL_6Q98_012

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGACACGUGGUAUCC

Length

15 nucleotides

Bulged bases

6Q98|1|1|G|386, 6Q98|1|1|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|G|380
6Q98|1|1|G|381
6Q98|1|1|A|382
6Q98|1|1|C|383
6Q98|1|1|A|384
6Q98|1|1|C|385
6Q98|1|1|G|386
6Q98|1|1|U|387
6Q98|1|1|G|388
6Q98|1|1|G|389
6Q98|1|1|U|390
6Q98|1|1|A|391
6Q98|1|1|U|392
6Q98|1|1|C|393
6Q98|1|1|C|394

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28