3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GGGGUCAACCCGACUUAC
Length
18 nucleotides
Bulged bases
6Q98|1|1|A|887, 6Q98|1|1|C|890, 6Q98|1|1|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q98|1|1|G|880
6Q98|1|1|G|881
6Q98|1|1|G|882
6Q98|1|1|G|883
6Q98|1|1|U|884
6Q98|1|1|C|885
6Q98|1|1|A|886
6Q98|1|1|A|887
6Q98|1|1|C|888
6Q98|1|1|C|889
6Q98|1|1|C|890
6Q98|1|1|G|891
6Q98|1|1|A|892
6Q98|1|1|C|893
6Q98|1|1|U|894
6Q98|1|1|U|895
6Q98|1|1|A|896
6Q98|1|1|C|897

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 4
Transfer-messenger RNA; tmRNA
Chain I
50S ribosomal protein L11
Chain M
50S ribosomal protein L16

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1686 s