HL_6Q98_025
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGGGUCAACCCGACUUAC
- Length
- 18 nucleotides
- Bulged bases
- 6Q98|1|1|A|887, 6Q98|1|1|C|890, 6Q98|1|1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|G|880
6Q98|1|1|G|881
6Q98|1|1|G|882
6Q98|1|1|G|883
6Q98|1|1|U|884
6Q98|1|1|C|885
6Q98|1|1|A|886
6Q98|1|1|A|887
6Q98|1|1|C|888
6Q98|1|1|C|889
6Q98|1|1|C|890
6Q98|1|1|G|891
6Q98|1|1|A|892
6Q98|1|1|C|893
6Q98|1|1|U|894
6Q98|1|1|U|895
6Q98|1|1|A|896
6Q98|1|1|C|897
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain I
- 50S ribosomal protein L11
- Chain M
- 50S ribosomal protein L16
Coloring options: