HL_6Q98_026

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG(PSU)GCUAACGUC

Length

12 nucleotides

Bulged bases

6Q98|1|1|G|956, 6Q98|1|1|U|958, 6Q98|1|1|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_026 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.368

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Q98|1|1|G|953
6Q98|1|1|G|954
6Q98|1|1|PSU|955
6Q98|1|1|G|956
6Q98|1|1|C|957
6Q98|1|1|U|958
6Q98|1|1|A|959
6Q98|1|1|A|960
6Q98|1|1|C|961
6Q98|1|1|G|962
6Q98|1|1|U|963
6Q98|1|1|C|964

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16