HL_6Q98_035

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6Q98|1|1|U|1396, 6Q98|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_035 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.2277

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Q98|1|1|G|1389
6Q98|1|1|U|1390
6Q98|1|1|U|1391
6Q98|1|1|A|1392
6Q98|1|1|A|1393
6Q98|1|1|U|1394
6Q98|1|1|A|1395
6Q98|1|1|U|1396
6Q98|1|1|U|1397
6Q98|1|1|C|1398

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23