HL_6Q98_037

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6Q98|1|1|C|1493, 6Q98|1|1|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_037 not in the Motif Atlas

Homologous match to HL_7A0S_037

Geometric discrepancy: 0.3391

The information below is about HL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39243.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6Q98|1|1|G|1492
6Q98|1|1|C|1493
6Q98|1|1|A|1494
6Q98|1|1|A|1495
6Q98|1|1|A|1496
6Q98|1|1|U|1497
6Q98|1|1|C|1498

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2