HL_6Q98_047

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGGUUAGCGCAAGCGAAGCUCU

Length

23 nucleotides

Bulged bases

6Q98|1|1|C|1870, 6Q98|1|1|A|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|G|1860
6Q98|1|1|G|1861
6Q98|1|1|G|1862
6Q98|1|1|G|1863
6Q98|1|1|U|1864
6Q98|1|1|U|1865
6Q98|1|1|A|1866
6Q98|1|1|G|1867
6Q98|1|1|C|1868
6Q98|1|1|G|1869
6Q98|1|1|C|1870
6Q98|1|1|A|1871
6Q98|1|1|A|1872
6Q98|1|1|G|1873
6Q98|1|1|C|1874
6Q98|1|1|G|1875
6Q98|1|1|A|1876
6Q98|1|1|A|1877
6Q98|1|1|G|1878
6Q98|1|1|C|1879
6Q98|1|1|U|1880
6Q98|1|1|C|1881
6Q98|1|1|U|1882

Current chains

Chain 1

23S ribosomal RNA

Nearby chains