HL_6Q98_051

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCC

Length

35 nucleotides

Bulged bases

6Q98|1|1|U|2131, 6Q98|1|1|U|2132, 6Q98|1|1|C|2145, 6Q98|1|1|U|2155, 6Q98|1|1|G|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|G|2127
6Q98|1|1|G|2128
6Q98|1|1|C|2129
6Q98|1|1|U|2130
6Q98|1|1|U|2131
6Q98|1|1|U|2132
6Q98|1|1|G|2133
6Q98|1|1|A|2134
6Q98|1|1|A|2135
6Q98|1|1|G|2136
6Q98|1|1|U|2137
6Q98|1|1|G|2138
6Q98|1|1|U|2139
6Q98|1|1|G|2140
6Q98|1|1|G|2141
6Q98|1|1|A|2142
6Q98|1|1|C|2143
6Q98|1|1|G|2144
6Q98|1|1|C|2145
6Q98|1|1|C|2146
6Q98|1|1|A|2147
6Q98|1|1|G|2148
6Q98|1|1|U|2149
6Q98|1|1|C|2150
6Q98|1|1|U|2151
6Q98|1|1|G|2152
6Q98|1|1|C|2153
6Q98|1|1|A|2154
6Q98|1|1|U|2155
6Q98|1|1|G|2156
6Q98|1|1|G|2157
6Q98|1|1|A|2158
6Q98|1|1|G|2159
6Q98|1|1|C|2160
6Q98|1|1|C|2161

Current chains

Chain 1

23S ribosomal RNA

Nearby chains