HL_6Q98_055

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_055 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3133

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6Q98|1|1|G|2303
6Q98|1|1|G|2304
6Q98|1|1|U|2305
6Q98|1|1|C|2306
6Q98|1|1|G|2307
6Q98|1|1|G|2308
6Q98|1|1|A|2309
6Q98|1|1|C|2310
6Q98|1|1|A|2311
6Q98|1|1|U|2312
6Q98|1|1|C|2313

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain E

50S ribosomal protein L5