HL_6Q98_063

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_063 not in the Motif Atlas

Homologous match to HL_7A0S_062

Geometric discrepancy: 0.2765

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6Q98|1|1|C|2594
6Q98|1|1|G|2595
6Q98|1|1|U|2596
6Q98|1|1|G|2597
6Q98|1|1|A|2598
6Q98|1|1|G|2599

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain B

50S ribosomal protein L2