HL_6Q98_064

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_064 not in the Motif Atlas

Geometric match to HL_6UFH_004

Geometric discrepancy: 0.3591

The information below is about HL_6UFH_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6Q98|1|1|C|2658
6Q98|1|1|G|2659
6Q98|1|1|A|2660
6Q98|1|1|G|2661
6Q98|1|1|A|2662
6Q98|1|1|G|2663

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6