HL_6Q98_096

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UCGCGAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_096 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.393

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6Q98|1|2|U|1264
6Q98|1|2|C|1265
6Q98|1|2|G|1266
6Q98|1|2|C|1267
6Q98|1|2|G|1268
6Q98|1|2|A|1269
6Q98|1|2|G|1270
6Q98|1|2|A|1271

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19