HL_6Q98_104

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCUUAAUAACC

Length

11 nucleotides

Bulged bases

6Q98|1|4|U|123, 6Q98|1|4|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|4|G|117
6Q98|1|4|C|118
6Q98|1|4|U|119
6Q98|1|4|U|120
6Q98|1|4|A|121
6Q98|1|4|A|122
6Q98|1|4|U|123
6Q98|1|4|A|124
6Q98|1|4|A|125
6Q98|1|4|C|126
6Q98|1|4|C|127

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain g

30S ribosomal protein S2

Chain h

30S ribosomal protein S3

Chain j

30S ribosomal protein S5