HL_6Q98_105

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUAGCCUCCGCUCUUAGGACGG

Length

22 nucleotides

Bulged bases

6Q98|1|4|A|165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|4|C|147
6Q98|1|4|U|148
6Q98|1|4|A|149
6Q98|1|4|G|150
6Q98|1|4|C|151
6Q98|1|4|C|152
6Q98|1|4|U|153
6Q98|1|4|C|154
6Q98|1|4|C|155
6Q98|1|4|G|156
6Q98|1|4|C|157
6Q98|1|4|U|158
6Q98|1|4|C|159
6Q98|1|4|U|160
6Q98|1|4|U|161
6Q98|1|4|A|162
6Q98|1|4|G|163
6Q98|1|4|G|164
6Q98|1|4|A|165
6Q98|1|4|C|166
6Q98|1|4|G|167
6Q98|1|4|G|168

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain o

30S ribosomal protein S10