HL_6Q98_113
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGGG(PSU)GCUAACGUCCG
- Length
- 16 nucleotides
- Bulged bases
- 6Q98|1|1|U|958, 6Q98|1|1|C|961
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|C|951
6Q98|1|1|G|952
6Q98|1|1|G|953
6Q98|1|1|G|954
6Q98|1|1|PSU|955
6Q98|1|1|G|956
6Q98|1|1|C|957
6Q98|1|1|U|958
6Q98|1|1|A|959
6Q98|1|1|A|960
6Q98|1|1|C|961
6Q98|1|1|G|962
6Q98|1|1|U|963
6Q98|1|1|C|964
6Q98|1|1|C|965
6Q98|1|1|G|966
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
Coloring options: