HL_6Q98_119
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUCGUGAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q98_119 not in the Motif Atlas
- Geometric match to HL_8KAL_008
- Geometric discrepancy: 0.3309
- The information below is about HL_8KAL_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6Q98|1|1|G|2592
6Q98|1|1|U|2593
6Q98|1|1|C|2594
6Q98|1|1|G|2595
6Q98|1|1|U|2596
6Q98|1|1|G|2597
6Q98|1|1|A|2598
6Q98|1|1|G|2599
6Q98|1|1|A|2600
6Q98|1|1|C|2601
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain B
- 50S ribosomal protein L2
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