HL_6Q98_125

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAACUGAGACACGGUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|G|319
6Q98|1|2|A|320
6Q98|1|2|A|321
6Q98|1|2|C|322
6Q98|1|2|U|323
6Q98|1|2|G|324
6Q98|1|2|A|325
6Q98|1|2|G|326
6Q98|1|2|A|327
6Q98|1|2|C|328
6Q98|1|2|A|329
6Q98|1|2|C|330
6Q98|1|2|G|331
6Q98|1|2|G|332
6Q98|1|2|U|333
6Q98|1|2|C|334

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20