HL_6Q98_128

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCCGCAAGGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_128 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3772

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Q98|1|2|G|895
6Q98|1|2|C|896
6Q98|1|2|C|897
6Q98|1|2|G|898
6Q98|1|2|C|899
6Q98|1|2|A|900
6Q98|1|2|A|901
6Q98|1|2|G|902
6Q98|1|2|G|903
6Q98|1|2|U|904

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA