HL_6Q9A_013

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6Q9A|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1002

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6Q9A|1|1|G|410
6Q9A|1|1|G|411
6Q9A|1|1|A|412
6Q9A|1|1|C|413
6Q9A|1|1|C|414
6Q9A|1|1|A|415
6Q9A|1|1|U|416
6Q9A|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains