HL_6Q9A_054
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6Q9A|1|1|A|2268, 6Q9A|1|1|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q9A_054 not in the Motif Atlas
- Homologous match to HL_5J7L_187
- Geometric discrepancy: 0.1023
- The information below is about HL_5J7L_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6Q9A|1|1|C|2264
6Q9A|1|1|U|2265
6Q9A|1|1|A|2266
6Q9A|1|1|A|2267
6Q9A|1|1|A|2268
6Q9A|1|1|G|2269
6Q9A|1|1|A|2270
6Q9A|1|1|G|2271
6Q9A|1|1|U|2272
6Q9A|1|1|A|2273
6Q9A|1|1|A|2274
6Q9A|1|1|C|2275
6Q9A|1|1|G|2276
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
Coloring options: