HL_6Q9A_062

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_062 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.1924

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Q9A|1|1|C|2551
6Q9A|1|1|OMU|2552
6Q9A|1|1|G|2553
6Q9A|1|1|U|2554
6Q9A|1|1|U|2555
6Q9A|1|1|C|2556
6Q9A|1|1|G|2557

Current chains

Chain 1

23S ribosomal RNA

Nearby chains