HL_6Q9A_084

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_084 not in the Motif Atlas

Homologous match to HL_6CZR_086

Geometric discrepancy: 0.1411

The information below is about HL_6CZR_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6Q9A|1|2|C|689
6Q9A|1|2|G|690
6Q9A|1|2|G|691
6Q9A|1|2|U|692
6Q9A|1|2|G|693
6Q9A|1|2|A|694
6Q9A|1|2|A|695
6Q9A|1|2|A|696
6Q9A|1|2|U|697
6Q9A|1|2|G|698

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 4

Transfer-messenger RNA; tmRNA

Chain l

30S ribosomal protein S7

Chain p

30S ribosomal protein S11

Chain z

30S ribosomal protein S21