HL_6Q9A_090
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 6Q9A|1|2|A|968, 6Q9A|1|2|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q9A_090 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.1933
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Q9A|1|2|G|963
6Q9A|1|2|A|964
6Q9A|1|2|U|965
6Q9A|1|2|2MG|966
6Q9A|1|2|5MC|967
6Q9A|1|2|A|968
6Q9A|1|2|A|969
6Q9A|1|2|C|970
6Q9A|1|2|G|971
6Q9A|1|2|C|972
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain n
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S13
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