HL_6Q9A_103
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGGCGGUUGGC
- Length
- 11 nucleotides
- Bulged bases
- 6Q9A|1|4|G|54
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q9A_103 not in the Motif Atlas
- Geometric match to HL_4OQU_002
- Geometric discrepancy: 0.3263
- The information below is about HL_4OQU_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_30680.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6Q9A|1|4|G|53
6Q9A|1|4|G|54
6Q9A|1|4|G|55
6Q9A|1|4|C|56
6Q9A|1|4|G|57
6Q9A|1|4|G|58
6Q9A|1|4|U|59
6Q9A|1|4|U|60
6Q9A|1|4|G|61
6Q9A|1|4|G|62
6Q9A|1|4|C|63
Current chains
- Chain 4
- tmRNA
Nearby chains
- Chain p
- 30S ribosomal protein S11
- Chain z
- 30S ribosomal protein S21
Coloring options: