HL_6Q9A_104
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCUUAAUAACC
- Length
- 11 nucleotides
- Bulged bases
- 6Q9A|1|4|U|120, 6Q9A|1|4|U|123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q9A_104 not in the Motif Atlas
- Geometric match to HL_2Y9H_004
- Geometric discrepancy: 0.3382
- The information below is about HL_2Y9H_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14333.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Q9A|1|4|G|117
6Q9A|1|4|C|118
6Q9A|1|4|U|119
6Q9A|1|4|U|120
6Q9A|1|4|A|121
6Q9A|1|4|A|122
6Q9A|1|4|U|123
6Q9A|1|4|A|124
6Q9A|1|4|A|125
6Q9A|1|4|C|126
6Q9A|1|4|C|127
Current chains
- Chain 4
- tmRNA
Nearby chains
- Chain g
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S3
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