HL_6Q9A_117
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- (PSU)GCUAACG
- Length
- 8 nucleotides
- Bulged bases
- 6Q9A|1|1|U|958, 6Q9A|1|1|C|961
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q9A_117 not in the Motif Atlas
- Homologous match to HL_5J7L_211
- Geometric discrepancy: 0.1903
- The information below is about HL_5J7L_211
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
6Q9A|1|1|PSU|955
6Q9A|1|1|G|956
6Q9A|1|1|C|957
6Q9A|1|1|U|958
6Q9A|1|1|A|959
6Q9A|1|1|A|960
6Q9A|1|1|C|961
6Q9A|1|1|G|962
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
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