HL_6QCS_001

3D structure

PDB id

6QCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Influenza B polymerase pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGUAA

Length

6 nucleotides

Bulged bases

6QCS|1|V|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QCS_001 not in the Motif Atlas

Geometric match to HL_4WRT_001

Geometric discrepancy: 0.0839

The information below is about HL_4WRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

6QCS|1|V|U|3
6QCS|1|V|A|4
6QCS|1|V|G|5
6QCS|1|V|U|6
6QCS|1|V|A|7
6QCS|1|V|A|8

Current chains

Chain V

5 end

Nearby chains

Chain A

Polymerase acidic protein

Chain B

RNA-directed RNA polymerase catalytic subunit