HL_6QDV_004
3D structure
- PDB id
- 6QDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human post-catalytic P complex spliceosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 6QDV|1|6|C|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDV_004 not in the Motif Atlas
- Homologous match to HL_6ASO_001
- Geometric discrepancy: 0.3168
- The information below is about HL_6ASO_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
6QDV|1|6|U|64
6QDV|1|6|G|65
6QDV|1|6|C|66
6QDV|1|6|G|67
6QDV|1|6|C|68
6QDV|1|6|A|69
6QDV|1|6|A|70
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 5
- U5 spliceosomal RNA; U5 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain E
- Ligated exons: MINX mRNA
- Chain G
- Protein FAM32A
- Chain J
- Pleiotropic regulator 1
- Chain K
- SNW domain-containing protein 1
- Chain P
- Spliceosome-associated protein CWC15 homolog
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