HL_6QDW_006

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6QDW|1|b|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_006 not in the Motif Atlas

Geometric match to HL_6QN3_003

Geometric discrepancy: 0.2378

The information below is about HL_6QN3_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6QDW|1|b|U|137
6QDW|1|b|U|138
6QDW|1|b|U|139
6QDW|1|b|C|140
6QDW|1|b|G|141
6QDW|1|b|A|142

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23