HL_6QDW_015

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6QDW|1|b|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_015 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1118

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6QDW|1|b|G|410
6QDW|1|b|G|411
6QDW|1|b|A|412
6QDW|1|b|C|413
6QDW|1|b|C|414
6QDW|1|b|A|415
6QDW|1|b|U|416
6QDW|1|b|C|417

Current chains

Chain b

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15