HL_6QDW_027

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GGGGGUCAUCCCGACUUACC

Length

20 nucleotides

Bulged bases

6QDW|1|b|C|890, 6QDW|1|b|A|898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QDW|1|b|G|881
6QDW|1|b|G|882
6QDW|1|b|G|883
6QDW|1|b|G|884
6QDW|1|b|G|885
6QDW|1|b|U|886
6QDW|1|b|C|887
6QDW|1|b|A|888
6QDW|1|b|U|889
6QDW|1|b|C|890
6QDW|1|b|C|891
6QDW|1|b|C|892
6QDW|1|b|G|893
6QDW|1|b|A|894
6QDW|1|b|C|895
6QDW|1|b|U|896
6QDW|1|b|U|897
6QDW|1|b|A|898
6QDW|1|b|C|899
6QDW|1|b|C|900

Current chains

Chain b

23S rRNA

Nearby chains