HL_6QDW_034
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GUUAAUC
- Length
- 7 nucleotides
- Bulged bases
- 6QDW|1|b|U|1327, 6QDW|1|b|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDW_034 not in the Motif Atlas
- Homologous match to HL_5J7L_166
- Geometric discrepancy: 0.1356
- The information below is about HL_5J7L_166
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_57176.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6QDW|1|b|G|1326
6QDW|1|b|U|1327
6QDW|1|b|U|1328
6QDW|1|b|A|1329
6QDW|1|b|A|1330
6QDW|1|b|U|1331
6QDW|1|b|C|1332
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
- Chain z
- Gamma-crystallin B
Coloring options: