HL_6QDW_036

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6QDW|1|b|U|1398, 6QDW|1|b|U|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_036 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1004

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|G|1391
6QDW|1|b|U|1392
6QDW|1|b|U|1393
6QDW|1|b|A|1394
6QDW|1|b|A|1395
6QDW|1|b|U|1396
6QDW|1|b|A|1397
6QDW|1|b|U|1398
6QDW|1|b|U|1399
6QDW|1|b|C|1400

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23