HL_6QDW_045

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_045 not in the Motif Atlas

Homologous match to HL_7RQB_044

Geometric discrepancy: 0.1133

The information below is about HL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6QDW|1|b|C|1754
6QDW|1|b|G|1755
6QDW|1|b|A|1756
6QDW|1|b|A|1757
6QDW|1|b|G|1758

Current chains

Chain b

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L19