HL_6QDW_052

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGGCCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

6QDW|1|b|U|2115, 6QDW|1|b|G|2116, 6QDW|1|b|U|2122, 6QDW|1|b|A|2130, 6QDW|1|b|G|2131, 6QDW|1|b|U|2134, 6QDW|1|b|U|2135, 6QDW|1|b|A|2146, 6QDW|1|b|C|2147, 6QDW|1|b|G|2148, 6QDW|1|b|A|2151, 6QDW|1|b|G|2152, 6QDW|1|b|U|2153, 6QDW|1|b|A|2162, 6QDW|1|b|G|2163, 6QDW|1|b|C|2168, 6QDW|1|b|C|2182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QDW|1|b|C|2107
6QDW|1|b|C|2108
6QDW|1|b|U|2109
6QDW|1|b|U|2110
6QDW|1|b|G|2111
6QDW|1|b|A|2112
6QDW|1|b|U|2113
6QDW|1|b|G|2114
6QDW|1|b|U|2115
6QDW|1|b|G|2116
6QDW|1|b|U|2117
6QDW|1|b|A|2118
6QDW|1|b|G|2119
6QDW|1|b|G|2120
6QDW|1|b|A|2121
6QDW|1|b|U|2122
6QDW|1|b|A|2123
6QDW|1|b|G|2124
6QDW|1|b|G|2125
6QDW|1|b|U|2126
6QDW|1|b|G|2127
6QDW|1|b|G|2128
6QDW|1|b|G|2129
6QDW|1|b|A|2130
6QDW|1|b|G|2131
6QDW|1|b|G|2132
6QDW|1|b|C|2133
6QDW|1|b|U|2134
6QDW|1|b|U|2135
6QDW|1|b|U|2136
6QDW|1|b|G|2137
6QDW|1|b|A|2138
6QDW|1|b|A|2139
6QDW|1|b|G|2140
6QDW|1|b|U|2141
6QDW|1|b|G|2142
6QDW|1|b|U|2143
6QDW|1|b|G|2144
6QDW|1|b|G|2145
6QDW|1|b|A|2146
6QDW|1|b|C|2147
6QDW|1|b|G|2148
6QDW|1|b|C|2149
6QDW|1|b|C|2150
6QDW|1|b|A|2151
6QDW|1|b|G|2152
6QDW|1|b|U|2153
6QDW|1|b|C|2154
6QDW|1|b|U|2155
6QDW|1|b|G|2156
6QDW|1|b|C|2157
6QDW|1|b|A|2158
6QDW|1|b|U|2159
6QDW|1|b|G|2160
6QDW|1|b|G|2161
6QDW|1|b|A|2162
6QDW|1|b|G|2163
6QDW|1|b|C|2164
6QDW|1|b|C|2165
6QDW|1|b|G|2166
6QDW|1|b|G|2167
6QDW|1|b|C|2168
6QDW|1|b|C|2169
6QDW|1|b|U|2170
6QDW|1|b|U|2171
6QDW|1|b|G|2172
6QDW|1|b|A|2173
6QDW|1|b|A|2174
6QDW|1|b|A|2175
6QDW|1|b|U|2176
6QDW|1|b|A|2177
6QDW|1|b|C|2178
6QDW|1|b|C|2179
6QDW|1|b|A|2180
6QDW|1|b|C|2181
6QDW|1|b|C|2182
6QDW|1|b|C|2183
6QDW|1|b|U|2184
6QDW|1|b|U|2185
6QDW|1|b|U|2186
6QDW|1|b|A|2187
6QDW|1|b|A|2188
6QDW|1|b|U|2189
6QDW|1|b|G|2190

Current chains

Chain b

23S rRNA

Nearby chains