3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
CUGUUCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QDW_063 not in the Motif Atlas
Homologous match to HL_4WF9_058
Geometric discrepancy: 0.1425
The information below is about HL_4WF9_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

6QDW|1|b|C|2555
6QDW|1|b|U|2556
6QDW|1|b|G|2557
6QDW|1|b|U|2558
6QDW|1|b|U|2559
6QDW|1|b|C|2560
6QDW|1|b|G|2561

Current chains

Chain b
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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