HL_6QDW_068

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6QDW|1|b|U|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_068 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.4159

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6QDW|1|b|C|2799
6QDW|1|b|C|2800
6QDW|1|b|U|2801
6QDW|1|b|U|2802
6QDW|1|b|G|2803
6QDW|1|b|A|2804
6QDW|1|b|G|2805

Current chains

Chain b

23S rRNA

Nearby chains