HL_6QDW_072
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDW_072 not in the Motif Atlas
- Homologous match to HL_4WJ4_003
- Geometric discrepancy: 0.1911
- The information below is about HL_4WJ4_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
6QDW|1|v|G|52
6QDW|1|v|U|53
6QDW|1|v|U|54
6QDW|1|v|C|55
6QDW|1|v|G|56
6QDW|1|v|A|57
6QDW|1|v|U|58
6QDW|1|v|U|59
6QDW|1|v|C|60
Current chains
- Chain v
- glycine-tRNA glyT
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
- Chain m
- 50S ribosomal protein L16
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