HL_6QIK_051

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6QIK|1|A|A|2372, 6QIK|1|A|A|2373, 6QIK|1|A|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_051 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1092

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6QIK|1|A|G|2369
6QIK|1|A|G|2370
6QIK|1|A|G|2371
6QIK|1|A|A|2372
6QIK|1|A|A|2373
6QIK|1|A|C|2374
6QIK|1|A|G|2375
6QIK|1|A|G|2376
6QIK|1|A|G|2377
6QIK|1|A|C|2378

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain e

60S ribosomal protein L32